PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G18160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 450aa    MW: 49265 Da    PI: 7.3004
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G18160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.21.7e-16741135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  OPUNC04G18160.1  7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41
                     ****************55555***********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-9153IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.85E-11545No hitNo description
CDDcd002028.51E-15640No hitNo description
PROSITE profilePS5011411.345740IPR000679Zinc finger, GATA-type
PfamPF003202.6E-14741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-12741IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLTNYTPMHA RDDIDAEEPR  60
ASKLKPPTLK LKEQKQPKKN PIHITMENGP FSDQNFRKMG DPDLSNRSGS GSALSYSESC  120
APYGTADASE MTASAQSHAW ESLVPSKRRS CVTRPKPSPV EKLAKDLNSI MHEEQLLYLS  180
GSSEEDLIYR SETPVDSFEM GYGSMLLRPN SKSPEEESEA SSIPADNKSY ITSESYSGSV  240
SFVYSESKAT SNQNVITEQP KKFLVQTSDS ARRANFHTEN QDTLENANSP LVSLHMEGKD  300
SEETRVKTCA SNRLTKSTVN PLKRPHGTHF QSSIELRGTM RSPKRVSKYG DVMGLNCQAS  360
FVPKPGNAKD LASSDRALNL FMLPPDKLSM LVPPHYSNND SDQDLLLDVP LNARHPEAEL  420
LCQPSQLSSV AHSSTSEGGS AGGEGCLKQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0707290.0AK070729.1 Oryza sativa Japonica Group cDNA clone:J023063M07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634879.10.0PREDICTED: uncharacterized protein LOC4336558
TrEMBLA0A0E0KTF60.0A0A0E0KTF6_ORYPU; Uncharacterized protein
STRINGBGIOSGA014620-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.36e-62GATA transcription factor 26